Attention: current browsing session uses filtered data.

Sample Filters

Vizome allows you to work with the entire set of samples in our Crenolanib dataset by default.

But you may want to apply a filter so that you're working with only a subset of the samples.

Vizome offers three different ways to apply sample-based filters. They have the following labels: Bar charts, Serial, and List.

Bar charts

Click on a small bar graph to open a larger version of it. In the opened chart, click individual bars to select/de-select samples.

If you want to add another category, you may decide whether to combine selections across categories with "or" or "and." Note that within the same category, selections will always be combined with "or." It is only across categories that the combination method can change.

When you have chosen your desired subset of samples, give it a label, if desired, and click and the subset will be the only samples that appear throughout Vizome for the current browsing session.

After saving one group, you will have the option to repeat the steps to save another group, in order to compare two groups of samples across Vizome. Note that the two groups must be composed of different samples. If any samples in the second group are already included in the first group, the second group cannot be saved.

You will see a notification appear at the top of the page, summarizing the current set of global filters.

Serial

The Serial filtering option gives you fine-grained control over which samples make up your subset. When you select a category — isRelapse, for example — sample data appears in tabular form, with "Timepoints" (one per sample) as columns and patients as rows.

Values for each sample appear as color-coded rectangles with a checkbox. You can select or unselect all samples with a certain value — TRUE, for example — via the checkboxes in the legend at right.

If you want to add another category, you may decide whether to combine selections across categories with "or" or "and." Note that within the same category, selections will always be combined with "or." It is only across categories that the combination method can change. You may select/unselect individual samples at any time by checking or unchecking the box in the sample's table cell.

Below the table, you will see a count of the total number of samples selected. When you have chosen your desired subset of samples, give it a label, if desired, and click . The subset will then be the only samples that appear throughout Vizome for the current browsing session.

You will see a notification appear at the top of the page, summarizing the current set of global filters.

List

If you already know the IDs (e.g., "14-00123") of the samples you would like to use as a subset, the List filtering option gives you an easy way to set that up.

Enter a list of sample IDs separated either by commas or line breaks. Give the list a label, if desired, and click . The subset will then be the only samples that appear throughout Vizome for the current browsing session.

After saving one group, you will have the option to enter a new list of sample IDs to save another group, in order to compare two groups of samples across Vizome. Note that the two groups must be composed of different samples. If any of the samples in your second group are already included in your first group, the second group cannot be saved.

You will see a notification appear at the top of the page, summarizing the current set of global filters.

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