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Chronology view


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Chronology view

This view displays DNA variants for a given gene, sorted by sample date for each patient.

Sample attributes can be shown by making selections in the "Sample attributes" drop-down menu.

Global filters affect this view. Any sample-based filters set here and/or variant filters set here determine what patients and variants appear in this view. If no global filters are set, all are shown.

If a global sample group comparison is active, the patient IDs are color-coded by group.

Each patient has one row, and for each sample they have, a light gray box appears in the "Timepoint" columns. The box represents the length of the gene. If that sample contains a variant in this gene, a black rectangle appears at the variant's position in the gene.

When sample attributes are selected via the drop-down menu at right, the light gray "Timepoint" boxes will be color-coded according to the chosen attribute.

TheGeneCards link icon after the gene name at the top of the page links to the GeneCards entry for this gene.

Mousing over a "Timepoint" box will open a zoomed-in view of that timepoint. Variants in the zoomed-in view are color-coded according to variant type, and mousing over them hides other variants while keeping that particular variant displayed in all other patients.

Clicking on a variant in the zoomed-in view will replace this view with the individual-based gene model view.

Clicking on the small green arrow above a single variant in the zoomed-in view will export CSV data for samples with that particular variant.

Variant types can be toggled on/off with the checkboxes at right.

Sample attributes can be chosen from the drop-down menu at right, and the "Timepoint" boxes will be color-coded accordingly.

Clicking the export button Export variants will prepare a CSV of the variants for this gene.

Export data from this selection