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CNV View

Download all CNVs in genes of interest

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Drag an area of a chromosome to zoom in. Plot will appear below.
Download CNV data for this region
Copy number variation view

This view displays the copy number variation (CNV) regions determined by log2(tumor read count/pooled normal count), keeping only those with absolute value > 0.5.

Global filters do not affect this view.

CNVs appear on chromosomes 1-22, with amplifications in red and deletions in blue.

The height of the colored bar corresponds to the count of samples with a CNV in that region, with a maximum of 33.

In the lower plot that appears when zoomed in, genes (if any) are shown on the forward and reverse strands, and below them, the individual CNVs, color-coded as above. The CNVs are positioned by copy ratio (log2(tumor read count/pooled normal read count)) on the y-axis, and genomic position on the x-axis.

Drag an area of a chromosome to zoom in on that area. The zoomed-in plot will appear below.

Mousing over a gene in the zoomed-in plot displays the gene name.

Mousing over a CNV in the zoomed-in plot displays the sample ID.

Clicking the export button Export CNV will prepare a CSV of the CNV data for the region currently displayed.

Export data from this selection